frims: So if I install the games to Galaxy, my Morriwind game where I am in Vivec for the main quest will still have my saves if I install and open Morrowind in Galaxy?
If you have GOG version of Morrowind installed on your computer, then you don't need to install it second time through Galaxy. More likely Galaxy will notice that you already have this game installed and add it to the list. You may need to verify files if Galaxy will show something like "Unknown version". This will not affect your saved games.
If you have non-GOG version of Morrowind installed (CD-version, steam version, etc.), then you will need to install Morrowind through Galaxy. This will create the second copy of the game on your computer. Those copies will share saved games. This is not really good to have two similar programs at one time as you will need additional disc space. You may install Galaxy Morrowind in the same folder but this may create difficulties for future uninstall. So if you already have Morrowind installed, it is not GOG Morrowind and you want Morrowind in Galaxy, the best way is to backup your saved games (never trust an installer to keep something important), uninstall your existing copy (selecting to keep saved games), install the game from GOG installer (offline or Galaxy). If the installer works correct then you will have your saved games available (in the documents folder). If something gone wrong use the backup to restore your saved games.